Python library to facilitate genome assembly, annotation, and comparative genomics
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Updated
May 14, 2024 - Python
Python library to facilitate genome assembly, annotation, and comparative genomics
An analysis and visualization platform for 'omics data
Eukaryotic Genome Annotation Pipeline
The Ensembl Compara Perl API and SQL schema
Chromosome visualization for the web
HyPhy: Hypothesis testing using Phylogenies
A grammar of graphics for comparative genomics
Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Micro 612 genomics workshop
Genome wide orthology inference and dNdS estimation
Build a partitioned pangenome graph from microbial genomes
Guided synteny alignment between duplicated genomes (within specified quota constraint)
A fast whole-genome aligner based on de Bruijn graphs
A genome visualization python package for comparative genomics
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
CoGe (Comparative Genomics) Platform
Scripts and procedures for detecting positively selected genes and codons in primates
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
Pan-genomic sequence analysis
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
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