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49 Open 407 Closed
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Issues list

What about more than 100 Species?
#648 opened Apr 24, 2024 by Z1997B
2
Issues in Microsynteny visualization
#640 opened Apr 3, 2024 by lvyunyunSCI
1
blocks mapping to the chromosome without those blocks
#639 opened Mar 31, 2024 by 123jjhy
4
what is command for calculate ka ks ka/ks
#637 opened Mar 15, 2024 by XuewenWangUGA
1
在jcvi.graphics.synteny 这个脚本绘图，发现block阴影很淡。
#636 opened Mar 12, 2024 by yuanhuanhahahaha
failed to extract correct .bed file from gff file which is generated from prokka : python -m jcvi.formats.gff bed
#634 opened Mar 4, 2024 by yyyuechen
3
Microsynteny 微共线性分析怎么修改线的颜色和粗细
#631 opened Feb 20, 2024 by isunshine-cc
Switch to using genomepy as a dependency instead of SizesFile
#628 opened Feb 19, 2024 by tanghaibao
@tanghaibao
Paralogs
#626 opened Feb 9, 2024 by romseg
Karyotype "Error: some genes in blocks can't be found, please rerun after making sure that bed file agree with simple file."
#621 opened Jan 20, 2024 by jmpolinski
Issue with using jcvi in google colab
#619 opened Jan 2, 2024 by whisperingkahuna
@tanghaibao
3
AttributeError: 'LayoutLine' object has no attribute 'color
#616 opened Dec 15, 2023 by mixle18
Create the input file for MSTMap
#613 opened Nov 30, 2023 by Marije179
How to use genetic map (markers.csv) file to scafold a haplotype phased assembly from contig level to pseudochromosome level.
#604 opened Oct 12, 2023 by ap1438
5
lastal: I was installed here with multi-threading disabled
#603 opened Oct 8, 2023 by MR-D-CJ
1
How to draw lines to the inside
#599 opened Sep 27, 2023 by hushaoqiang
5
--iter=2 flag in jcvi.compara.synteny mcscan doesnot provide any additional regions !
#584 opened Aug 2, 2023 by UpalabdhaD
1
IndexError: list index out of range
#579 opened Jun 29, 2023 by Alalakikun
3
Doubt about the jcvi.formats.gff bed
#572 opened Jun 10, 2023 by z626093820
3
老师您好！请帮我解答一下的问题：
#571 opened May 25, 2023 by Daishoulu
1
When inputing parts of genes, gene SGR00005418.1 could not find anchors in another species
#566 opened May 10, 2023 by YANGMEI0127
2
--genelabels= won't work.
#558 opened Apr 7, 2023 by lczqd
5
jcvi.graphics.karyotype:IndexError: list index out of range
#557 opened Apr 5, 2023 by trubohe
4
IndexError: list index out of range
#555 opened Mar 29, 2023 by suying77
2
Support Microsynteny plots with genome alignment data new feature TODO
#547 opened Feb 18, 2023 by Adamtaranto
8 tasks
@Adamtaranto
3
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