A neural named entity recognition and multi-type normalization tool for biomedical text mining
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Updated
Apr 18, 2022 - Python
A neural named entity recognition and multi-type normalization tool for biomedical text mining
BERN2: an advanced neural biomedical namedentity recognition and normalization tool
Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
Saber is a deep-learning based tool for information extraction in the biomedical domain. Pull requests are welcome! Note: this is a work in progress. Many things are broken, and the codebase is not stable.
BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction
Tokenization, sentence segmentation, POS tagging and dependency parsing for biomedical texts (BMC Bioinformatics 2019)
Fast, world class biomedical NER
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
PENNER: Pattern-enhanced Nested Named Entity Recognition in Biomedical Literature (BIBM'18)
Biomedical Data-to-Text Generation via Fine-Tuning Transformers
Biomedical Relation Extraction with Knowledge Graph-based Recommendations
A Silver Standard Corpus of Human Phenotype-Gene Relations
SciLK: a Scientific natural Language Toolkit
Official implementation of PPI Relation Extraction (IEEE BigData 2022)
A full-text article retrieval pipeline for biomedical literature.
👑🦠 Annotating PMC and PubMed articles for Covid-related entities
Bio-Electra - Small and efficient discriminatively pre-trained language representation models for biomedical text mining
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