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@lasigeBioTM

BioTM, LASIGE, Fac. Ciências, Universidade de Lisboa

Biomedical Text Mining Team

Popular repositories

  1. MER MER Public

    Minimal Named-Entity Recognizer (MER)

    Shell 53 8

  2. BiOnt BiOnt Public

    BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

    Python 26 6

  3. DiShIn DiShIn Public

    Semantic Similarity Measures using Disjunctive Shared Information

    Python 24 4

  4. BOLSTM BOLSTM Public

    Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies

    Python 14 2

  5. PGR PGR Public

    A Silver Standard Corpus of Human Phenotype-Gene Relations

    Python 12 3

  6. merpy merpy Public

    MER python interface

    Python 11 5

Repositories

Showing 10 of 56 repositories
  • BENT Public

    Biomedical Term Annotator

    Python 9 Apache-2.0 1 0 0 Updated May 21, 2024
  • REEL Public

    REEL: Relation Extraction for Entity Linking

    Python 10 Apache-2.0 3 0 2 Updated May 3, 2024
  • MultiNEL-corpus Public

    A multilingual silver standard corpus containing English, Portuguese and Spanish clinical case reports annotated with medical diagnostic codes

    Python 3 1 0 1 Updated May 3, 2024
  • NILINKER Public

    Attention-based approach to NIL Entity Linking

    Python 2 0 1 0 Updated Mar 19, 2024
  • MiCRA Public

    Microbial Communities for Regenerative Agriculture

    Python 0 0 0 0 Updated Jan 31, 2024
  • K-RET Public

    K-RET: Knowledgeable Biomedical Relation Extraction System

    Python 8 Apache-2.0 3 0 0 Updated Jan 11, 2024
  • BiOnt Public

    BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

    Python 26 Apache-2.0 6 1 0 Updated Nov 30, 2023
  • K-BiOnt Public

    Biomedical Relation Extraction with Knowledge Graph-based Recommendations

    Python 9 Apache-2.0 3 0 0 Updated Nov 30, 2023
  • biocreativeVII Public

    lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies

    Python 1 Apache-2.0 0 0 0 Updated Nov 30, 2023
  • 1 Apache-2.0 0 0 0 Updated Nov 23, 2023

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