Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)

A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks

Bioformer: an efficient BERT model for biomedical text mining

This repository contains the code used for distillation and fine-tuning of compact biomedical transformers that have been introduced in the paper "On The Effectiveness of Compact Biomedical Transformers"

This is the code for our paper "BMRetriever: Tuning Large Language Models as Better Biomedical Text Retrievers".

Patient Family History extraction tool

BERT-for-BioNLP-OST2019-AGAC-Task2

AGAC-BioNL-OST2009-Task1 BERT+CRF

PheSeq, A Bayesian Deep Learning Model to Enhance and Interpret the Gene Disease Association Studies

Cancer-Alterome is a comprehensive and curated dataset that focuses on the investigation of regulatory events caused by gene alteration in the context of cancer.

MSR Cambridge Internship Summer 2023

BioCreative VIII track 2