Repository of Jupyter Notebooks created by the Bio2Byte group
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Updated
May 23, 2024 - Jupyter Notebook
Repository of Jupyter Notebooks created by the Bio2Byte group
Contains a sample dataset with rehab sessions of stroke victims and data preparation example
Materials for course about processing HybSeq data on computing grids
Test data for MultiQC.
Shell script to sort .gtf files
Services and guidelines for normalizing drug and other therapy terms
d3 library to build circular graphs
A data visualization tool to display tissue expression data for Arabidopsis thaliana
A simple Python script using Biopython to convert FASTA files to GenBank format. The script prompts the user for input and output filenames, along with the molecule type (default is DNA). Ensure accurate and annotated GenBank files for your biological sequence data.
Datastores for reads, not your papa's FASTQ files.
Reproducible and reusable test data for bioinformatics projects.
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
implementation of Burrows–Wheeler transform on a Gene Sequence - Bioinformatics Course - Fall 2019
Binning biological data tracks and producing RDS containing data.tables
A web crawler which scrapes https://anapatterns.org. Visits each of the IC pattern pages, and collects the related antigens.
Metadetabase of 13145 records generated for Allergens with a tabular view of the data. Web interface connected to ease the use, analysis and extraction of data with several added functionalities. Tutorial section added to educate the users of the interface design and features and the database.
Tools for working with the Seven Bridges bioinformatics platform.
Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget
Python interface to NCBI Eutils
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