Experimental tech-demo for PhD thesis in Scientific Markdown; official:
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Updated
Oct 20, 2021 - Shell
Experimental tech-demo for PhD thesis in Scientific Markdown; official:
3D Analysis of confocal images of microbial biofilms/communities
2D biofilm simulation based on the implementation outlined in Introduction to Computational Science by Angela and George Shiflet.
This package models the dynamics of a biofilm using the Julia programming language.
Code to accompany the paper: ”An Open-Source Computational Tool for Measuring Bacterial Biofilm Morphology and Growth Kinetics upon One-Sided Exposure to an Anti-Microbial Source”
Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.
A web app to calculate Anti-Biofilm Combination Index (ABCI)
This is all the code utilized in the analysis for "Vertical growth dynamics of biofilms".
1D reactive–transport model of botanical biofiltration of VOCs
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