vertical_growth_biofilms

This is all the code utilized in the analysis for "Vertical growth dynamics of biofilms".

First we build a .csv database for all the timelapse data using database_creation.jl, many experimental metrics are calculated here.
Profiles are then fitted to multiple models in /fitting/allstrainfit.jl
Code for each figure is in /figs/scripts/.

Original .datx files from the Zygo Interferometer are available upon request.

Name		Name	Last commit message	Last commit date
Latest commit History 122 Commits
bootstrapping		bootstrapping
data		data
figs		figs
fitting		fitting
geometry		geometry
longtime_behavior		longtime_behavior
responses		responses
.gitignore		.gitignore
LICENSE.md		LICENSE.md
Project.toml		Project.toml
README.md		README.md
database_creation.jl		database_creation.jl
ecoli_lserine.png		ecoli_lserine.png
fig34_new.svg		fig34_new.svg
interface_table.jl		interface_table.jl
model_comparison.jl		model_comparison.jl
monod_approx.svg		monod_approx.svg
monod_approx_ecoli1.png		monod_approx_ecoli1.png
monod_approx_ecoli2.png		monod_approx_ecoli2.png
monod_diffusion_effective.png		monod_diffusion_effective.png
updated_geometry.png		updated_geometry.png

pbravoc/vertical_growth_biofilms