BAS is a Python-based program for exploratory analysis of digital images from biofilm growth experiments.
Installation
Download here the .exe file that corresponds to your OS.
Pre-Usage
You should always arrange your images from experiments in 2 folders: Biofilm and Reference. This will allow the program to identify them and function correctly.
Usage
Typical usage should be as follows:
- Run the .exe file
- Select the experiment folder
- Follow the steps inside the UI
- Export your results
Functionalities
- Image segmentation
- Filter selection: Grayscale and Green channel
- Biofilm quantification based on a Thresholding Method
- Descriptive Statistics of Biofilm images
Authors
- Jose Zapana
- Pierre Padilla
- Anderson Castilla
- Daniel Guerra