Scripts developed to work with 10x Genomics sequencing results
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Updated
Sep 20, 2017 - R
Scripts developed to work with 10x Genomics sequencing results
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.
De novo assembly pipeline for 10X linked-reads using Supernova
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
Scripts for sincle cell multiome analysis
Demultiplexing pipeline for sequencing data
Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads
Repository of the master project in Bioinformatics at Lund University
Linked-reads based structural variant caller with barcode indexing
🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
Standalone tool and library allowing to work with barcoded linked-reads
Awesome single-cell CITE-sequencing Pipeline
⛓ Correct misassemblies using linked AND long reads
⛓️ Construct a Physical Map from Linked Reads
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