Tools that make spatial transciptomics easier / Outils pour simplifier la transcriptomique spatiale
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Updated
May 4, 2024 - Jupyter Notebook
Tools that make spatial transciptomics easier / Outils pour simplifier la transcriptomique spatiale
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
Repository of the master project in Bioinformatics at Lund University
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Demultiplexing pipeline for sequencing data
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Scripts developed to work with 10x Genomics sequencing results
Single-Cell RNA-seq analysis workflow for 10x Genomics data
Awesome single-cell CITE-sequencing Pipeline
🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
De novo assembly pipeline for 10X linked-reads using Supernova
Linked-reads based structural variant caller with barcode indexing
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
Single-cell/nuclei pipeline for data derived from Oxford Nanopore
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