Awesome single-cell CITE-sequencing Pipeline
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Updated
Sep 12, 2023 - Python
Awesome single-cell CITE-sequencing Pipeline
Tools that make spatial transciptomics easier / Outils pour simplifier la transcriptomique spatiale
R package containing functions useful for stitching Visium capture areas. Related to https://github.com/LieberInstitute/LS_visiumStitched
Converting any SpatialData object into files that can be open by the Xenium Explorer
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Repository of the master project in Bioinformatics at Lund University
Rmarkdown scripts for adult human postmortem SN & Cortex cell atlas project.
One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Scripts developed to work with 10x Genomics sequencing results
🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
Single-Cell RNA-seq analysis workflow for 10x Genomics data
A Snakemake workflow for processing and visualizing (multimodal) sc/snRNA-seq data generated with 10X Genomics Kits or in the MTX matrix file format powered by the R package Seurat.
R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
Demultiplexing pipeline for sequencing data
RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @cornell-TREX
scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data
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