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Merge branch 'master' of github.com:welchr/swiss
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welchr committed Dec 26, 2016
2 parents dca2240 + a83fdca commit 5518b69
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Expand Up @@ -54,10 +54,17 @@ The latest package tarballs are here:

| Version | Date | Install |
|---------|------------|---------------------------------------------------------------|
| 1.0b2 | 11/30/2016 | `pip install git+https://github.com/welchr/swiss.git@v1.0b2` |
| 1.0b1 | 11/27/2016 | `pip install git+https://github.com/welchr/swiss.git@v1.0b1` |

## Changes

1.0b2 - 11/30/2016

New features:

* Script to create GWAS catalog without waiting for data releases `swiss-create-data` - see [Generate GWAS catalog](#generate-gwas-catalog) for more info

1.0b1 - 11/27/2016

**This version has backwards incompatible changes with the previous 0.x
Expand Down Expand Up @@ -103,10 +110,10 @@ You can install directly from the tarball as a regular python package:

```bash
# Install globally
pip install git+https://github.com/welchr/swiss.git@v1.0b1
pip install git+https://github.com/welchr/swiss.git@v1.0b2

# Install in ~/.local/ instead
pip install --user git+https://github.com/welchr/swiss.git@v1.0b1
pip install --user git+https://github.com/welchr/swiss.git@v1.0b2
```

If you don't have administrator privileges on your machine, you can install into your home directory by adding `--user`. This causes pip to install packages into `~/.local/lib/python2.7/site-packages/`, and binaries/scripts into `~/.local/bin/`. In this case, you will want to make sure `~/.local/bin/` is in your $PATH (`export PATH="/home/<user>/.local/bin:$PATH"`).
Expand All @@ -116,7 +123,7 @@ An alternative would be to install into a virtualenv, to keep swiss encapsulated
```bash
virtualenv swiss
source swiss/bin/activate
pip install git+https://github.com/welchr/swiss.git@v1.0b1
pip install git+https://github.com/welchr/swiss.git@v1.0b2
swiss --help
```

Expand All @@ -125,7 +132,7 @@ If you're using anaconda/miniconda, and prefer to use conda environments rather
```bash
conda create -n swiss
source activate swiss
pip install git+https://github.com/welchr/swiss.git@v1.0b1
pip install git+https://github.com/welchr/swiss.git@v1.0b2
swiss --help
```

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