Automatic Cell Segmentation by Adaptive Thresholding (ACSAT) for large scale calcium imaging datasets

Simon P Shen¹*, Hua-an Tseng²*, Kyle R Hansen², Ruofan Wu³, Howard Gritton², Jennie Si³**, Xue Han²**

¹ Department of Physics, Harvard University, Cambridge, MA 02138

² Biomedical Engineering Department, Boston University, Boston, MA 02215

³ School of Electrical, Computer and Energy Engineering, Tempe, AZ 85287

* S.P.S. and H.T. are co-first authors

** X.H. and J.S. are co-corresponding authors

J.S.: (480) 965-6133; si (at) asu (dot) edu

X.H.: (617) 358-6189; xuehan (at) bu (dot) edu

bioRxiv 260075; doi: https://doi.org/10.1101/260075

eNeuro 4 September 2018; doi: https://doi.org/10.1523/ENEURO.0056-18.2018