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Automatic Cell Segmentation by Adaptive Thresholding (ACSAT) for large scale calcium imaging datasets

Simon P Shen1*, Hua-an Tseng2*, Kyle R Hansen2, Ruofan Wu3, Howard Gritton2, Jennie Si3**, Xue Han2**

1 Department of Physics, Harvard University, Cambridge, MA 02138

2 Biomedical Engineering Department, Boston University, Boston, MA 02215

3 School of Electrical, Computer and Energy Engineering, Tempe, AZ 85287

* S.P.S. and H.T. are co-first authors

** X.H. and J.S. are co-corresponding authors

J.S.: (480) 965-6133; si (at) asu (dot) edu

X.H.: (617) 358-6189; xuehan (at) bu (dot) edu

bioRxiv 260075; doi: https://doi.org/10.1101/260075

eNeuro 4 September 2018; doi: https://doi.org/10.1523/ENEURO.0056-18.2018