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@dbdimitrov dbdimitrov released this 14 Mar 06:34
· 51 commits to main since this release
1.0.5
11f7ff4

What's Changed

  • Added ScSeqComm Method, implemented by @BaldanMatt (#68)

  • Added functions to query a metabolite-receptor interactions database (MetalinksDB), including:
    => li.rs.get_metalinks to get the database
    => li.rs.get_metalinks_values to get the distinct annotation values of the database
    => describe_metalinks to get a description of the database

  • Added a metabolite-mediated CCC tutorial in spatially-resolved multi-omics data (#45).

  • Changed hardcoded constants to be defined in _constants.py

  • Excluded CellChat from the default rank_aggregate method

  • Fixed return logic of SpatialBivariate

  • li.mt.process_scores is now exported to li.mt

  • Changed the default max_neighbours in li.ut.spatial_neighbors to 1/10 of the number of spots.

Full Changelog: 1.0.4...1.0.5

Contributors

dbdimitrov and BaldanMatt
Assets 2