Welcome to FUNKI, the omics FUNctional analysis worKflows Interface tool. This Python package is intended to integrate different omic data analysis workflows including a graphical user interface (GUI), but also as a standalone Python package that users can integrate into their existing pipelines.
This package is currently in development and features are being added regularly. If you have any ideas/suggestions or if you find any bug, please feel free to open an GitHub issue. You can also contribute via pull request.
Please note that the GUI is not yet implemented and FUNKI can only be accessible as a Python package.
To install FUNKI in your local computer you can use pip as follows:
pip install git+https://github.com/saezlab/funkiEverything within FUNKI is works around an instance of a
DataSet
object. This class in turn inherits (i.e. is built on top of) the
anndata.AnnData
class
You can find the full documentation in the FUNKI documentation webpage.