Version 1.6.9
1.6.9 (2019-04-29)
Implemented enhancements:
- Update AWS deployment docs for v1.6.8 #3116
- New dashboard doesn't show Analysis information in DataSet Delete modal #2894
- Statistics Page - Slow Loading #2488
- Sorting data sets on launch pad is hard without more feed back #2143
- Intro JS for the launchpad broken in repo mode #1773
- Workflow Detail Page: Toggle Bug #1725
- DataSet Explorer: the preview link's tooltip can stay permanently #1540
- Sorting Datasets by name is case-dependent #1530
- Data set summary panel should contain a list of all direct ontology annotations #1015
- Study API takes long time when the dataset has many files associated to it #738
- Enhance Data Set Description #643
- Handle stale session condition. #323
- Add components to launch download script modal. #3294 (jkmarx)
- Add command line admin tools to AWS instance and Vagrant VM #3293 (hackdna)
- Put Solr data dirs outside the source tree on both AWS and Vagrant #3283 (hackdna)
- Set number of CPU cores in Vagrant to two to match t2.medium on AWS #3282 (hackdna)
- Update RDS backup window #3280 (hackdna)
Fixed bugs:
- Resizing description box covers up save button #3267
- TypeError in data_sets API #3251
- Explore Page -> View in File Browser button broken #3224
- Landing Page - Text hides behind dropdown when activated #3222
- IGV unable to access input files #3219
- File Browser - Grid Disappears #3213
- Failed to Load Resources - console error #3210
- Landing Page - Embedded Videos not loading #3209
- HTTP 500 in analysis API due to AttributeError in get_object_list() #3199
- User.DoesNotExist error in files API #3175
- Prevent submitting data set until all data files have been uploaded #3114
- Error importing tabular metadata file - no samples displayed #2962
- Error in browser console on GET requests #2832
- High response times and system load after adding data sets #2789
- Neo4j is accessible without authentication on AWS #2549
- Wrong highlighting, old popover stuck, first page of tutorial #2485
- HTTP 500 error in DataSet API #2451
- JS error in workflow visualization #2379
- Spurious error message in SharableResourceAPIInterface #2378
- Data sets text search hides sort options #2363
- Spurious slashes added to source name of data set files #2340
- FF Depth bug even worse when rooted on particular nodes #2137
- Data Set summary is exposed on private sets even with no login #1888
- Intro JS for the launchpad broken in repo mode #1773
- Dataset sharing/unsharing with Public Group leaves UI artifacts #1618
- Reference loading indictator should timeout #1587
- Ontology term box tabs are mis-positioned on FF #1551
- Jumpy dataset list on the data explorer #1549
- DataSet Explorer: the preview link's tooltip can stay permanently #1540
- Django-Rest Swagger Broken on Test Site #1470
- Dataset API always returns is_owner=true #826
- settings.CONVERSION_DIR is used but not set in Django settings #588
- Fix incorrect field reference. #3356 (jkmarx)
- Fix bug due to incorrect reference. #3355 (jkmarx)
- Add missing context. #3354 (jkmarx)
- Fix close button position. #3353 (jkmarx)
- Add missing serializer fields. #3350 (jkmarx)
- Fix text which shouldn't be shown. #3349 (jkmarx)
- Fix missing cancel button. #3347 (jkmarx)
- Fix bug due to missing lookup field. #3346 (jkmarx)
- Resolve loading error. #3344 (jkmarx)
- Fix missing delete analysis button. #3343 (jkmarx)
- Fix hiding of buttons on resize. #3340 (jkmarx)
- Add missing serializer field to resolve ui bug. #3325 (jkmarx)
- Fix bug with incorrect logic. #3323 (jkmarx)
- Add label stying to prevent label hiding. #3321 (jkmarx)
- Raise error when user object is not found. #3312 (jkmarx)
- Avoid unneccessary api call. #3303 (jkmarx)
- Jkmarx/fix analysis auto call bug #3292 (jkmarx)
Closed issues:
- Address all current Celery configuration deprecations #3326
- Upgrade Supervisor to v3.2.0 or higher #3320
- Command line user data uploads for new data sets #3240
- Upgrade PostgreSQL to v10.6 #3180
- Launch Pad/Explore Remove #3162
- Change default app server instance type to t2 #3157
- Update EBS data volume configuration #3052
- Analyses Tab - Add owner sort #2973
- Explore Data-Set Cart #2674
- Satori - UI Bugs #2673
- RemovedInDjango19Warning for Tastypie #2618
- SSL warnings in urllib3 #2617
- RemovedInDjango19Warning for django-celery #2614
- Update Django URL Patterns #2593
- Purge non-essential management commands #2580
- Isolate AWS related deployment artifacts #1276
- Remove hardcoded values from Puppet manifests #1164
- Distinguish between different attribute annotations #918
- Project deployment directory is cluttered with .tmp and .librarian #854
- Puppet modules should not live in project directory #853
- Compile a list of synonyms for Solr #769
Merged pull requests:
- Hackdna/update api urls #3348 (hackdna)
- Add timezone helper in serializer. #3342 (jkmarx)
- Hackdna/update urls #3341 (hackdna)
- Update params per style guide. #3339 (jkmarx)
- Jkmarx/update group view set params #3338 (jkmarx)
- Update to match style guide for params for analysis view set #3337 (jkmarx)
- Add unit tests. #3336 (jkmarx)
- Jkmarx/refactor viewset names #3335 (jkmarx)
- Update Django-related packages in preparation for v1.9 upgrade #3334 (hackdna)
- Jkmarx/remove solr synonyms setting #3332 (jkmarx)
- Remove amqplib and upgrade librabbitmq to version 2.0.0 #3331 (hackdna)
- Jkmarx/remove neo4j #3330 (jkmarx)
- Add comments to api for clarity. #3328 (jkmarx)
- Hackdna/celery upgrade #3327 (hackdna)
- Remove swagger. #3324 (jkmarx)
- Upgrade Supervisor to version 4.0.0 #3322 (hackdna)
- Remove tasty pie. #3318 (jkmarx)
- Jkmarx/update client to invite api v2 #3317 (jkmarx)
- Add get_group helper method. #3316 (jkmarx)
- Jkmarx/create group invitations api #3314 (jkmarx)
- Remove unused group api v1 resource. #3311 (jkmarx)
- Update client to group memebers api v2. #3310 (jkmarx)
- Jkmarx/add group member api #3309 (jkmarx)
- Revert "Jkmarx/extend group api to delete" #3308 (jkmarx)
- Jkmarx/extend group api to delete #3307 (jkmarx)
- Hackdna/postgresql update #3304 (hackdna)
- Jkmarx/update client with group api enhancements #3302 (jkmarx)
- Jkmarx/extend group api to delete #3301 (jkmarx)
- Jkmarx/extend group api return all user groups #3300 (jkmarx)
- Extend api to create groups. #3299 (jkmarx)
- Remove unused entries from .gitignore #3298 (hackdna)
- Jkmarx/remove unused group management resource #3297 (jkmarx)
- Hackdna/puppet modules #3296 (hackdna)
- jkmarx/remove-unused-workflow-client-service #3295 (jkmarx)
- Remove unused auth api resource. #3291 (jkmarx)
- Remove unneccessary auth service. #3290 (jkmarx)
- Remove unused shareable api resource and unused helpers. #3289 (jkmarx)
- Remove dataSetResource #3288 (jkmarx)
- Jkmarx/update client edit perms #3287 (jkmarx)
- Refactor other view sets to use helper. #3286 (jkmarx)
- Jkmarx/group patch perms #3285 (jkmarx)
- Remove snapshot scheduler and its tags #3284 (hackdna)
- Set refinery_s3_user_data to true on AWS by default #3281 (hackdna)
- Change default EC2 instance type for app server to t2.medium #3278 (hackdna)
- Hackdna/vagrantfile cleanup #3276 (hackdna)
- Jkmarx/remove unused user apis #3275 (jkmarx)
- Remove analysis resource api. #3274 (jkmarx)
- Make EBS volume config more robust #3273 (hackdna)
- Apache config update #3272 (hackdna)
- Jkmarx/update client with analysis api v2 #3271 (jkmarx)
- Hackdna/update file storage #3269 (hackdna)
- Jkmarx/extend analysis api #3266 (jkmarx)
- Jkmarx/groups api v2 #3265 (jkmarx)
- Jkmarx/remove unused workflow views #3264 (jkmarx)
- Jkmarx/remove workflow api v1 #3263 (jkmarx)
- Jkmarx/angularize workflow page #3262 (jkmarx)
- Jkmarx/remove attribute investigation publication resource #3260 (jkmarx)
- Jkmarx/remove study and node resource #3259 (jkmarx)
- Extend node v2 service. #3258 (jkmarx)
- Jkmarx/switch study resource v2 #3257 (jkmarx)
- Remove unused cypress test and fixtures. #3256 (jkmarx)
- Remove unused template. #3255 (jkmarx)
- Remove unused annotations. #3254 (jkmarx)
- Remove protocol resource which is not used by client. #3253 (jkmarx)
- Jkmarx/switch fb ds details to v2 #3252 (jkmarx)
- Remove assays api. #3249 (jkmarx)
- Jkmarx/remove explore satori #3246 (jkmarx)
- Sort analyses by owner name. #3243 (jkmarx)
- Hackdna/cmdline uploads #3242 (hackdna)
- Delete README.md for Terraform #3237 (hackdna)
- Revert "Jkmarx/fix position of text" #3235 (jkmarx)
- Integration tests for landing pages. #3228 (jkmarx)