The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and …

Tries to load any file into a pandas DataFrame, with a minimum of configuration, and a focus on bioinformatics

Django app that manages the creation of, and proxies requests to, Docker containers.

Interactive visualizations for differential expression

Builds a Refinery visualization Docker image for Lineup

"Refinery-ified" flavor of the higlass-docker (https://github.com/hms-dbmi/higlass-docker/) project

Solr query parser plugin that performs proper query-time synonym expansion.

Python wrapper for Kubernetes which matches the interface of Docker

Registry for Visualization Tool Annotations that are compatible with Refinery (https://github.com/refinery-platform/refinery-platform)

A Docker container to wrap IGV.js