Version 1.6.2
NOTE: When updating to use this release the following haystack
management command will have to be run to rebuild the Solr index: ./manage.py rebuild_index
Implemented enhancements:
- Lightning Bolt Icon is not a true representation of an Importing FilestoreItem's state #2382
- Prettier tool names #2155
- Data Set 2 - Update selection icon and select all icon #1833
- Data-Set 2 Layout/CSS #1666
- Move "URL shortcut" field from upload page to data set details in file browser #1629
- provide list of download URLs for selection #326
- Provide additional information when logging a file import error from S3 #2444 (hackdna)
- ISA-Tab Upload: Wrong remove color button #1727
- Allow deletion of the empty user data S3 buckets #2392 (hackdna)
Fixed bugs:
- Add read-meta perms to existing dataset objs w/ read perm #2455
- EC2 data volume type is set to magnetic #2442
- Download links not displayed in the data set view #2434
- File Browser - Tooltips Linger #2431
- Import Own Space Button - Fix color and padding #2401
- Spurious Solr error 404 in Celery log #2290
- Provenance Bug: URL fails to redirect #2285
- Seeing unexpected values for "type" in file browser #2106
- "study_uuid: AND assay_uuid:" solr syntax error #2063
- provenance attributes menu not showing on FF #1466
- Update ui tool_panel visibility based on perms. #2467 (jkmarx)
- Jkmarx/fixes for vis tab #2449 (jkmarx)
- Bug fix for checking the dataset object perms. #2445 (jkmarx)
- Set EC2 instance root volume type to gp2 #2443 (hackdna)
- Hide any users without profiles or a full_name. #2440 (jkmarx)
- Jkmarx/popover fix #2439 (jkmarx)
- Remove flaky tool tip. #2438 (jkmarx)
- Results missing from some successful analyses #2426
- Database migrations fail to apply automatically #2420
- Assertion error in test_analysis_deletion #2408
- KeyError when cancelling an Analysis before Galaxy Import stage #2397
- Downloading more files from Galaxy than specified by workflow #2293
- Assign unique name to each Celery worker #2404 (hackdna)
- Remove data_set_manager test data zip files from .gitignore #2395 (hackdna)
Closed issues:
- Sharing/Permissions UI #2390
- Details > History > "Import into own space" should get grey background #2356
- file browser filters disappear as new facets applied #2091
- With download url in solr, don't need the per-row api hits in file browser #2050
- Refactor provvis global scope usage #1000
- Decouple access control for data set metadata from access control for data samples #486
- Collaboration Permissions - View Meta Data Level #2389
- Remove the
WorkflowFilesDL
model #2173 - Assay Files Refactor/Fix Unit Test #1621
Merged pull requests:
- Remove slug ref from management command. #2475 (jkmarx)
- Remove slug reference when importing meta data form. #2474 (jkmarx)
- Remove slug edit from import form. #2473 (jkmarx)
- Add default class and padding. #2472 (jkmarx)
- Fix cog color. #2471 (jkmarx)
- Scottx611x/create attribute orders for exsting datsets #2469 (scottx611x)
- Jkmarx/download url index bug #2462 (jkmarx)
- Bump django_docker_engine version #2460 (scottx611x)
- scottx611x/update_existing_datasets_with_read_meta_perm #2457 (scottx611x)
- Scottx611x/working heatmap scatterplot #2456 (scottx611x)
- Bump codecov req #2453 (scottx611x)
- Scottx611x/fix bugs from rushing yesterday #2452 (scottx611x)
- Remove unused functions is_local, is_permanent, get_file_extension, g… #2448 (hackdna)
- Scottx611x/expose extra directories #2447 (scottx611x)
- Scottx611x/parameter updates #2446 (scottx611x)
- Jkmarx/add visualization tab #2437 (jkmarx)
- Scottx611x/expose vis tool status #2433 (scottx611x)
- Jkmarx/share modal file browser #2421 (jkmarx)
- Skip indexing for some files #2330 (mccalluc)
- Jkmarx/refactor provvis code #2317 (jkmarx)
- Fix duplicate migration error. #2430 (jkmarx)
- Hotfix 1.6.1.1 #2428 (scottx611x)
- Add UUIDField migrations for django-extensions update #2424 (hackdna)
- Rename meta.module_name to model_name for Django 1.8 #2422 (hackdna)
- Remove call to a deprecated method commit_unless_managed() #2418 (hackdna)
- Restrict serializer to pickle and add expiration for django_docker_cl… #2417 (hackdna)
- Scottx611x/only download exposed workflow outputs #2414 (scottx611x)
- Specify
base\_url
in GalaxyInstance Factory #2410 (scottx611x) - Jkmarx/add dataset read meta #2409 (jkmarx)
- Rename _meta.module_name to _meta.model_name for compatibility with D… #2406 (hackdna)
- Rename get_query_set() to get_queryset() for compatibility with Djang… #2405 (hackdna)
- Simplify Django logging config #2403 (hackdna)
- Update django-extensions to the latest version that supports Django 1.7 #2402 (hackdna)
- Remove unused custom template tag simple_name #2400 (hackdna)
- Scottx611x/fix 2397 #2399 (scottx611x)
- Remove unused package django-uuidfield #2396 (hackdna)
- Scottx611x/remove workflow files dl model #2384 (scottx611x)
- Add warning color to button. #2333 (jkmarx)