Version 1.6.0
Implemented enhancements:
- Show zero-count facets in cross-dataset browser #2088
- Allow associating uploaded data files with data sets imported from ISA archives #2053
- user/files: update facet counts on each click #2005
- user/files facet display should be the same as fb2 #2000
- user/files: csv export does not include data urls #1968
- Discrepancies between "Details" tab: file browser 1 vs. 2 #1890
- Group creation modal text update #1883
- Change annotation of workflows with single input. #268
Fixed bugs:
- Show zero-count facets in file browser #2089
- cross-dataset browser: Download urls are sometimes still paths #2086
- Internal server error when accessing visualization URLs that do not exist #2079
- HTTP 500 error when accessing data set API #2078
- Cross-dataset: rows do not match facet counts #2069
- all files download CSV fails on test if unfiltered (1000+ rows) #2064
- data_sets (new) making unnecessary API calls #2043
- user/files csv is broken: 500 #2004
- Database connection error when launching AWS stack with custom RDS_SUPERUSER_PASSWORD #1990
- /user/files: Why do zero-value facets even show up? #1973
- File not found error for /static/images/icons.svg #1967
- user/files filename sort doesn't work #1960
- Check that user/files link to dataset works #1958
- Publicly shared files are not visible when not logged in #1940
- On production /user/files API has no results if not logged in #1912
- filebrowser2: table rows disappear after scroll in short window #1900
- Data set samples are not always displayed in file browser 2 #1882
- Canceling analysis does not terminate file import tasks #1730
- RepoExplorer: initializing with custom root doesn't trigger a query #970
- RepoExplorer: Two AND queries don't work as expected #962
- RepoExplorer: List graph doesn't re-root on page load #961
- Locking a node in the treemap doesn't highlight it in the list graph #954
- analysis titles swapped when two analyses are launched simultaneously #631
Closed issues:
- Limit number of docker containers #2107
- Docker "please wait" page until visualization is available #2074
- Only one file of two file upload shows up in data_sets at first, but reindex helps #2049
- With the files facets collapsed by default, they should expand when there is a facet search #2023
- Facet sorts done right #2008
- Remove hide option from user/files columns #2003
- Replace analysis urls with fb2 urls with appropriate facet #2002
- simpler url: "user/files" should just be "files" #2001
- /user/files: where is technology? #1972
- Preserve facets when navigating from /user/files to filebrowser #1971
- user/files: Update history as filters and sorts change #1959
- user/files: updating filter or sort updates csv download #1957
- user/files facets should be OR, not AND #1955
- How to run esformatter? Does it have role in build? #1952
- Update check data files functionality to support S3 #1874
- Modify tabular metadata file upload form to use S3 #1711
- Use django_docker_engine's purge_inactive() #1670
- Turn on CORS on S3 #1669
- RepoExplorer: treemap and list-graph should be collapsible #969
- Merge Analysis().prepare_galaxy() into start_galaxy_analysis() #879
- Provide status updates for each Galaxy file import #878
- Remove unused templates? #783
- Add support for workflow ID changes in Galaxy #778
- Add support for Galaxy dataset collections #444
Merged pull requests:
- Hit this limit in testing, just bumping
max\_length
value #2112 (scottx611x) - Mccalluc/limit docker instances #2110 (mccalluc)
- Scottx611x/fix svg 404s #2109 (scottx611x)
- Mccalluc/bring back get assays #2104 (mccalluc)
- Purge docker containers after inactivity #2103 (mccalluc)
- Hackdna/isa tab uploaded files #2102 (hackdna)
- django docker please-wait page #2100 (mccalluc)
- Scottx611x/fix same name analysis results #2099 (scottx611x)
- Hackdna/file store settings update #2098 (hackdna)
- Add two missing closing div tags and reformat code accordingly #2097 (hackdna)
- Store full urls in solr index. Requires reindex. #2093 (mccalluc)
- zero-valued facets #2092 (mccalluc)
- Scottx611x/derived node attributes bugfix #2076 (scottx611x)
- Mccalluc/merge facets #2073 (mccalluc)
- download url in csv + map to ascii in csv #2072 (mccalluc)
- fixes the facet updating #2071 (mccalluc)
- Mccalluc/update url #2070 (mccalluc)
- More robust test. Towards #2067 #2068 (mccalluc)
- Scottx611x/analysis groups #2066 (scottx611x)
- undo copy and paste #2062 (mccalluc)
- Mccalluc/import into own space #2061 (mccalluc)
- Mccalluc/details tab #2060 (mccalluc)
- keep "import.html" this time; remove the others #2059 (mccalluc)
- Remove unneeded js from cross-dataset file browser #2058 (mccalluc)
- Jkmarx/data set clean up #2057 (jkmarx)
- Prevent old_file_browser api calls and grid generation in current fil… #2056 (jkmarx)
- Mccalluc/better fold on facet search #2055 (mccalluc)
- Scottx611x/analysis names in fb2 workaround #2046 (scottx611x)
- Mccalluc/update solr from celery #2044 (mccalluc)
- Scottx611x/remove fastqc viz #2042 (scottx611x)
- Mccalluc/user files csv filtering #2041 (mccalluc)
- Keeping the same filters between the two pages just will not work. #2040 (mccalluc)
- One last case I wanted to check #2038 (mccalluc)
- Mccalluc/isatab test #2035 (mccalluc)
- Scottx611x/Dataset Collection workflow output association #2024 (scottx611x)
- No more column menus. Easy. #2022 (mccalluc)
- Mccalluc/data sets to plain data sets #2021 (mccalluc)
- Mccalluc/simplify facet css #2018 (mccalluc)
- get_assays is buggy, and both are unused #2016 (mccalluc)
- data_sets2 slugs #2011 (mccalluc)
- Try to make this a little easier to read by replacing RE with constant #2010 (mccalluc)
- Mccalluc/new style analyses urls #2009 (mccalluc)
- user/files -> files; Not sure about csv #2007 (mccalluc)
- Mccalluc/incremental fb rename #1998 (mccalluc)
- Hackdna/s3 upload dataset integration #1997 (hackdna)
- Fix for #1882 #1995 (scottx611x)
- Allow for custom
RDS\_SUPERUSER\_PASSWORD
s to be set inconfig.yml
#1991 (scottx611x) - Scottx611x/test galaxy cleanup #1989 (scottx611x)
- Update phrasing to be more clear #1988 (scottx611x)
- Remove unused templates #1987 (scottx611x)
- Scottx611x/chucks recent prs #1986 (scottx611x)
- More user friendly max-height #1985 (scottx611x)
- I was sloppy earlier: We want to OR within, but AND across facets #1983 (mccalluc)
- Mccalluc/preserve facets in fb2 #1981 (mccalluc)
- Scottx611x/dataset collection updates #1980 (scottx611x)
- Hide zero facets #1979 (mccalluc)
- Title is unnecessary #1977 (mccalluc)
- Mccalluc/search facet labels #1976 (mccalluc)
- Mccalluc/max height #1975 (mccalluc)
- Mccalluc/where is technology #1974 (mccalluc)
- Mccalluc/make filename normal field #1969 (mccalluc)
- Put the button back on the dashboard #1965 (mccalluc)
- Mccalluc/user files sort by filename #1964 (mccalluc)
- Fix #1955: AND -> OR #1963 (mccalluc)
- Mccalluc/remove esformatter again #1962 (mccalluc)
- Not using jshint since #942 #1953 (mccalluc)
- More JS cleaning #1951 (mccalluc)
- Mccalluc/user files sorting #1950 (mccalluc)
- Scottx611x/workflow launching and monitoring #1949 (scottx611x)
- Mccalluc/link user files to data sets #1944 (mccalluc)
- Mccalluc/user files not logged in #1942 (mccalluc)
- Mccalluc/public datasets regression #1941 (mccalluc)
- Scottx611x/workflow launching #1939 (scottx611x)
- Mccalluc/unnecessary evals #1935 (mccalluc)
- "++" is not an operator in Python. #1934 (mccalluc)
- Mccalluc/errors from landscape #1933 (mccalluc)
- Mccalluc/no commit manually #1932 (mccalluc)
- Mccalluc/upgrade travis #1930 (mccalluc)
- isort everything #1927 (mccalluc)
- I think we were only indexing the values we got the last time through #1875 (mccalluc)
- Mccalluc/user files facets fixes #1869 (mccalluc)
- Masking errors not helpful #1863 (mccalluc)
- Mccalluc/cleanup data set manager models #1827 (mccalluc)
- Terminate file_import tasks upon cancellation of an Analysis #1747 (scottx611x)