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52 Open 169 Closed
52 Open 169 Closed
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Issues list

Database-backed config brainstorming
#284 opened Feb 22, 2024 by nsheff
Refgenie roadmap brainstorming
#283 opened Feb 22, 2024 by nsheff
2 of 21 tasks
refgene_anno.refgene_tss recipe fails to find some TSS
#282 opened Dec 16, 2023 by jeshleman-sgmo
1
Upgrading configuration from 0.3 to 0.4 fails
#281 opened Dec 13, 2023 by lparsons
Installing via conda misses the tqdm dependency
#280 opened Dec 13, 2023 by lparsons
refgenie is incompatible with Python 3.10 and above
#279 opened Dec 13, 2023 by lparsons
Refgenie local server GUI brainstorming
#278 opened Jan 20, 2023 by nsheff
Add custom assets: Ensembl Rapid Release
#277 opened Nov 9, 2022 by anilthanki
1
Mirror the references on Azure
#276 opened Aug 18, 2022 by vsmalladi
2
bwa_index seems to contain a symbolic link
#275 opened Aug 10, 2022 by ialbert
1
Is refgenie still being actively developed?
#274 opened Aug 2, 2022 by birnbera
4
Refgenie pull: Downloaded asset folder is empty
#273 opened Jul 1, 2022 by nich-sugiarto
No alias files created for custom refgenie fasta asset build
#272 opened Jun 17, 2022 by rcorces
Refgenie assets
#270 opened Mar 9, 2022 by gbloeb
Include additional structured metadata for assets
#269 opened Feb 19, 2022 by blankenberg
Failed to install refgenie
#267 opened Dec 24, 2021 by lsnsl123
1
issue downloading pre-built assets
#261 opened Jul 9, 2021 by chrishuges
6
Retain the effective refgenie build inputs enhancement likely-solved
#260 opened Jul 6, 2021 by pinin4fjords
6
Ability to disable secondary behaviours for builds
#259 opened Jun 18, 2021 by pinin4fjords
1
Automating asset building at scale
#254 opened Jun 3, 2021 by nsheff
29
KeyError: 'aliases' - problem with concurrency?
#253 opened Jun 3, 2021 by pinin4fjords
5
There is no way to assign multiple tags to one set of files in the asset directory
#252 opened Jun 1, 2021 by pinin4fjords
7
Limitations of single config file
#251 opened Jun 1, 2021 by pinin4fjords
23
Specifying specific fasta tag in indexing
#250 opened May 28, 2021 by pinin4fjords
4
Support for vcf/bed files?
#245 opened May 11, 2021 by lmfaber
2
ProTip! Follow long discussions with comments:>50.