Pooled Parallelization

v2.0.34

Pooled Set flag to skip reporting problematic regions

v2.0.33 plot updates

Parallelization and checkpointing of CRISPRessoWGS and Pooled
Increase of alignment efficiency of CRISPRessoPooled amplicons in genome +amplicons mode
Plotting computation window is shaded

v2.0.32

Plotting updates, dsODN detection, and general improvements and bug fixes.

v2.0.31 CRISPRessoPooled chr names fix, allele plot colors

Update dependency requirements
Add custom post-processing plot functions for allele tables
Fix CRISPRessoPooled handling of chromosomes with underscores

v2.0.30

add nucleotide summary for batch mode
fix bug for reporting amplicons with no reads
case-insensitive checking for guides

v2.0.29

By default, the html report is created on the outside of the output folder, so if the output is:
CRISPResso_on_SAMPLE/
the html report will be at
CRISPResso_on_SAMPLE.html
This functionality can be reverted to place the report inside of the output folder using the parameter --place_report_in_output_folder
which will place the html report at:
CRISPResso_on_SAMPLE/CRISPResso2_report.html

v2.0.28

Standardize window definitions (plot window and quantification window specify the distance from the cut site to the edge of the window, so the entire window is 2*plot window)
Standardize file names
Add CRISPREssoCompare output html
CRISPRessoBatch guide-specific output are plotted as separate plots

v2.0.27

Add reports for pooled and WGS
Add Batch pickle info
More precise plotting of cleavage cut site and quantification window
Bioconda updates

v2.0.26

add report display name, remove paths from stored files, fix sgRNA plot, CRISPRessoPooled report HTML, add citation to report

v2.0.25

v2.0.25 Add inferring of guides