Pooled Set flag to skip reporting problematic regions

pinellolab · Apr 7, 2020 · 7fb477f · 7fb477f
1 parent 6c3aeff
commit 7fb477f
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/CRISPResso2/CRISPRessoPooledCORE.py b/CRISPResso2/CRISPRessoPooledCORE.py
@@ -297,7 +297,7 @@ def main():
         parser.add_argument('--bowtie2_options_string', type=str, help='Override options for the Bowtie2 alignment command',default=' -k 1 --end-to-end -N 0 --np 0 ')
         parser.add_argument('--min_reads_to_use_region',  type=float, help='Minimum number of reads that align to a region to perform the CRISPResso analysis', default=1000)
         parser.add_argument('--skip_failed',  help='Continue with pooled analysis even if one sample fails',action='store_true')
-        parser.add_argument('--skip_reporting_problematic_regions',help='Skip reporting of problematic regions. By default, when both amplicons (-f) and genome (-x) are provided, problematic reads that align to the genome but to positions other than where the amplicons align are reported as problematic')
+        parser.add_argument('--skip_reporting_problematic_regions',help='Skip reporting of problematic regions. By default, when both amplicons (-f) and genome (-x) are provided, problematic reads that align to the genome but to positions other than where the amplicons align are reported as problematic',action='store_true')
         parser.add_argument('--crispresso_command', help='CRISPResso command to call',default='CRISPResso')
 
         args = parser.parse_args()

diff --git a/CRISPResso2/CRISPRessoShared.py b/CRISPResso2/CRISPRessoShared.py
@@ -31,7 +31,7 @@
 else:
     import cPickle as cp #python 2.7
 
-__version__ = "2.0.33"
+__version__ = "2.0.34"
 
 ###EXCEPTIONS############################
 class FlashException(Exception):