Update CRISPRessoPooledCORE.py

Fix debug statement
pinellolab · Jun 29, 2021 · b859435 · b859435
1 parent 9bc9b99
commit b859435
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/CRISPResso2/CRISPRessoPooledCORE.py b/CRISPResso2/CRISPRessoPooledCORE.py
@@ -681,7 +681,8 @@ def main():
                 for bam_line in bam_iter:
                     bam_line_els = bam_line.split('\t')
                     if len(bam_line_els) < 9:
-                        print('ERROR GOT BAM LINE : ' + bam_line + ' with els: ' + str(bam_line_els))
+                        if args.debug:
+                            info('ERROR got unexpected line from bam: ' + bam_line + ' with els: ' + str(bam_line_els))
                         continue
                     line_chr = bam_line_els[2]