Bump version to 2.3.1 and change default CRISPRessoPooled behavior to…

… change in 2.3.2

CRISPResso2/CRISPRessoShared.py

@@ -28,7 +28,7 @@
 from CRISPResso2 import CRISPResso2Align
 from CRISPResso2 import CRISPRessoCOREResources
 
-__version__ = "2.3.0"
+__version__ = "2.3.1"
 
 
 ###EXCEPTIONS############################
@@ -1701,7 +1701,7 @@ def get_crispresso_header(description, header_str):
                 term_width) + "\n" + output_line
 
     output_line += '\n' + ('[CRISPResso version ' + __version__ + ']').center(term_width) + '\n' + (
-        '[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.1, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center(
+        '[Note that as of version 2.3.0 FLASh and Trimmomatic have been replaced by fastp for read merging and trimming. Accordingly, the --flash_command and --trimmomatic_command parameters have been replaced with --fastp_command. Also, --trimmomatic_options_string has been replaced with --fastp_options_string.\n\nAlso in version 2.3.2, when running CRISPRessoPooled in mixed-mode (amplicon file and genome are provided) the default behavior will be as if the --demultiplex_only_at_amplicons parameter is provided. This change means that reads and amplicons do not need to align to the exact locations.]').center(
         term_width) + "\n" + ('[For support contact k.clement@utah.edu or support@edilytics.com]').center(term_width) + "\n"
 
     description_str = ""