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Issues list

Make scoring, filtering, and ranking rules configurable

#199 opened Apr 28, 2024 by iskandr

Build issues with jinja2.ext

#197 opened Aug 28, 2023 by saraahwallace

ValueError: Invalid contig name 'chr14_GL000194v1_random' for reference 'GRCh38'

#193 opened May 14, 2021 by leldershaw

ValueError: Unable to infer reference genome

#192 opened Dec 29, 2020 by Shuhui-d

Vaxrank '--output-neoepitope-report' fails on StopLoss variants

#189 opened Jun 8, 2020 by JPFinnigan

Add N-terminal methionine check to manufacturability

#188 opened Apr 15, 2020 by julia326

Use faster k-mer index for proteome instead of full FM index

#183 opened Feb 11, 2020 by iskandr

Rename "epitope" to "MHC ligand"

#181 opened Feb 11, 2020 by iskandr

Soften the requirements of vaxrank for isovar version

#179 opened Dec 12, 2019 by golubnikova

Errors when writing XLSX file

#178 opened Jun 13, 2019 by code12412f

Add low priority vaccine peptide filtering for C terminal residues that cause racemization

#174 opened Nov 27, 2018 by iskandr

Don't want to minimize GRAVY score

#171 opened Oct 8, 2018 by iskandr

Add class II predictions to report

#165 opened Jun 22, 2018 by julia326

Vaxrank with netmhcpan-iedb errors on IDH1 test data

#164 opened Jun 18, 2018 by julia326

Include gene name in Excel output

#156 opened Feb 7, 2018 by iskandr

Add option to exclude variants from JPT report

#155 opened Feb 7, 2018 by julia326

Add tissue expression to each variant

#154 opened Feb 6, 2018 by iskandr

Add gene summary to each variant

#153 opened Feb 6, 2018 by iskandr

Change vaccine peptide sort

#151 opened Jan 23, 2018 by julia326

Better clarify the terms used throughout the PDF report enhancement

#139 opened Jul 6, 2017 by armish

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