Pinned

1. pyensembl pyensembl Public

   Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

   Python 353 66

2. varcode varcode Public

   Library for manipulating genomic variants and predicting their effects

   Python 80 27

3. mhcflurry mhcflurry Public

   Peptide-MHC I binding affinity prediction

   Python 181 55

4. vaxrank vaxrank Public

   Ranked vaccine peptides for personalized cancer immunotherapy

   Python 53 20

5. mhctools mhctools Public

   Python interface to running command-line and web-based MHC binding predictors

   Python 82 18

6. neoantigen-vaccine-pipeline neoantigen-vaccine-pipeline Public

   Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines

   Jupyter Notebook 72 23