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Pull requests: openproblems-bio/openproblems

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Pull requests list

Data denoising is a full task
#894 opened Jan 24, 2024 by scottgigante Loading…
1
Update git2r to 0.33.0 dependencies Pull requests that update a dependency file r
#893 opened Dec 3, 2023 by github-actions bot • Draft
change python-igraph to igraph
#892 opened Jul 19, 2023 by szhorvat Loading…
4 of 14 tasks
1
Update sagemaker requirement from ==2.116.* to ==2.166.* in /docker/openproblems dependencies Pull requests that update a dependency file python Pull requests that update Python code
#891 opened Jun 20, 2023 by dependabot bot Loading…
1
Update protobuf requirement from ==3.20.* to ==4.23.* in /docker/openproblems-python-tensorflow dependencies Pull requests that update a dependency file python Pull requests that update Python code
#877 opened May 9, 2023 by dependabot bot Loading…
1
Update git2r to 0.32.0 dependencies Pull requests that update a dependency file r
#870 opened Apr 16, 2023 by github-actions bot • Draft
Bump peter-evans/create-pull-request from 4 to 5 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#866 opened Apr 5, 2023 by dependabot bot Loading…
1
Bump tensorflow from 2.9.0 to 2.12.0 in /docker/openproblems-python-tensorflow dependencies Pull requests that update a dependency file python Pull requests that update Python code
#863 opened Mar 27, 2023 by dependabot bot Loading…
1
Update torch requirement from ==1.12.* to ==2.0.* in /docker/openproblems-python-pytorch dependencies Pull requests that update a dependency file python Pull requests that update Python code
#859 opened Mar 22, 2023 by dependabot bot Loading…
2
Bump scanorama from 1.7.0 to 1.7.3 in /docker/openproblems-r-pytorch dependencies Pull requests that update a dependency file python Pull requests that update Python code
#858 opened Mar 22, 2023 by dependabot bot Loading…
2
Update bioc/scuttle to 1.8.4 dependencies Pull requests that update a dependency file r
#806 opened Jan 31, 2023 by github-actions bot • Draft
Update IRkernel to 1.3.2 dependencies Pull requests that update a dependency file r
#791 opened Jan 29, 2023 by github-actions bot • Draft
Update xgboost requirement from ==1.6.* to ==1.7.* in /docker/openproblems-python-extras dependencies Pull requests that update a dependency file python Pull requests that update Python code
#753 opened Dec 15, 2022 by dependabot bot Loading…
2
Remove sagemaker compatibility from docker images
#711 opened Nov 28, 2022 by scottgigante-immunai • Draft
12
Make "Majority Vote" a baseline method
#710 opened Nov 28, 2022 by rcannood • Draft
1 task done
9
add plotting functions from scib
#689 opened Nov 15, 2022 by danielStrobl • Draft
19 tasks
4
test dataset API on full datasets
#674 opened Nov 8, 2022 by scottgigante-immunai Loading…
5
Update tabulate requirement from <0.9 to <0.10 dependencies Pull requests that update a dependency file python Pull requests that update Python code
#660 opened Oct 31, 2022 by dependabot bot Loading…
2
run rctd in test mode help wanted Extra attention is needed method Add a new method
#559 opened Aug 30, 2022 by scottgigante-immunai • Draft
9 of 10 tasks
Add nusvr to spatial_decomposition help wanted Extra attention is needed method Add a new method
#543 opened Aug 24, 2022 by scottgigante-immunai • Draft
8 of 9 tasks
2
Add ivis to dimensionality_reduction help wanted Extra attention is needed method Add a new method
#393 opened May 8, 2022 by scottgigante-immunai • Draft
8 of 19 tasks
@lazappi
1
Add CITEseq CBMC dataset to DR dataset Add a new dataset or add an existing dataset to a task help wanted Extra attention is needed
#370 opened Apr 21, 2022 by scottgigante-immunai • Draft
8 of 19 tasks
Add SCOT to multimodal data integration help wanted Extra attention is needed method Add a new method
#357 opened Apr 14, 2022 by scottgigante-immunai • Draft
6 of 19 tasks
2
[New task] ATAC denoising task Add a new task
#311 opened Apr 1, 2021 by katosh Loading…
10 of 12 tasks
2
[New task] Expression prediction from ATAC
#244 opened Mar 29, 2021 by qinqian Loading…
3 of 12 tasks
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