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66 Open 111 Closed
66 Open 111 Closed
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Issues list

[label projection] SVM enhancement New feature or request method Add a new method
#862 opened Mar 26, 2023 by mxposed
datasets metadata
#855 opened Mar 15, 2023 by KaiWaldrant
1
[label projection] TOSICA enhancement New feature or request method Add a new method
#852 opened Mar 14, 2023 by scottgigante-immunai
2
[Label projection] Dataset zebrafish_labs does not have equal distribution of cell types per lab dataset Add a new dataset or add an existing dataset to a task invalid This doesn't seem right
#772 opened Jan 7, 2023 by mxposed
@mxposed
11
Use scanpy hvg with batch key instead of scib package
#696 opened Nov 17, 2022 by adamgayoso
@danielStrobl
1
Use scib-metrics implementations for batch integration embedding task enhancement New feature or request metric Add a new metric
#694 opened Nov 17, 2022 by adamgayoso
4
Add scripts for datasets bug Something isn't working
#679 opened Nov 14, 2022 by rcannood
@scottgigante-immunai
7
Next steps batch integration task:
#577 opened Sep 16, 2022 by LuckyMD
1 of 2 tasks
@danielStrobl
1
Openproblems-cli testing in dev mode with mounted package bug Something isn't working wontfix This will not be worked on
#551 opened Aug 30, 2022 by LuckyMD
2 tasks done
1
Openproblems install difficulty on new M1 Mac bug Something isn't working wontfix This will not be worked on
#550 opened Aug 30, 2022 by LuckyMD
[batch_integration_graph] scVI and scANVI do not use early stopping bug Something isn't working
#478 opened Jul 14, 2022 by scottgigante-immunai
2
Subtask structure
#395 opened May 10, 2022 by scottgigante-immunai
@LuckyMD @danielStrobl
1
Transcription factor activity estimation from scRNA-seq task enhancement New feature or request task Add a new task
#315 opened Apr 20, 2021 by PauBadiaM
Suggestion: create a preprocessing task enhancement New feature or request task Add a new task
#310 opened Apr 1, 2021 by stephaniehicks
2
Task wish list
#308 opened Mar 31, 2021 by LuckyMD
Wish list for datasets
#307 opened Mar 31, 2021 by LuckyMD
2
Regulatory effect prediction methods depend on more gene information enhancement New feature or request method Add a new method
#306 opened Mar 31, 2021 by qinqian
Task-specific test mode dataset loader infrastructure Improve the project infrastructure
#303 opened Mar 31, 2021 by qinqian
Rename "Multi-modal integration" task to "Multi-modal cell alignment"
#299 opened Mar 31, 2021 by atong01
3
Handling methods hyper parameters
#295 opened Mar 30, 2021 by giovp
2
[Dimensionality reduction] Add scvis enhancement New feature or request method Add a new method
#292 opened Mar 30, 2021 by michalk8
[spatial decomposition][new methods] methods for spatial decomposition enhancement New feature or request method Add a new method
#286 opened Mar 30, 2021 by giovp
5 of 7 tasks
2
[Task proposal] Multi-omics manifold mapping enhancement New feature or request task Add a new task
#281 opened Mar 30, 2021 by gjhuizing
4
Modify the dimensionality reduction (2D) API to require labels
#280 opened Mar 30, 2021 by lazappi
1
[Dimensionality reduction] Switch t-SNE to openTSNE
#275 opened Mar 29, 2021 by dkobak
@zsteve
3
ProTip! no:milestone will show everything without a milestone.