Citrus is a package for identifying clusters of cells in multidimensional flow cytometry data associated with an experimental or clincal endpoint of interest. Methods are described in the paper Automated identification of stratifying signatures in cellular subpopulations by Bruggner et al.
- Installation instructions available on the Installing Citrus Page.
- Instructionson how to configure Citrus for your data available on the Getting Started Page.
- Example analyses available on the Examples Page.
- See the Citrus FAQ for questions related to building and/or running Citrus.
- Version 0.08
- - Completely refactored codebase that is hopefully much more intuitive.
- - Documentation added.
- Version 0.07
- - Multiclass analysis available for SAM and Nearest Shrunken Centroid models
- - Small GUI enhancements
- Version 0.06
- - Changed feature names
- - Many new graphical outputs for result visualization
- Version 0.05
- - Adding support for SAM (two-class only)
- Version 0.04
- - Adding support for Survival analysis (glmnet model only)
- Version 0.03
- - Switching to ggplot2 and adding feature heiarachy plots
- Version 0.02
- - Now includes shiny web GUI for running citrus
- Version 0.01
- - Initial Citrus Test Code
