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@nolanlab

Garry P. Nolan Laboratory

Pinned

  1. CODEX CODEX Public

    Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java 36 13

  2. CODEXServer CODEXServer Public

    Run CODEX apps on the web: driftcompensation, deconvolution, segmentation, clustering and viewing

    Java

  3. CODEXServerSparkBuild CODEXServerSparkBuild Public

    Project to deploy the CODEX server on the left and right computers in the nolan lab.

    Java

  4. scaffold scaffold Public

    scaffold

    R 18 8

  5. vortex vortex Public

    VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    Java 33 6

  6. CODEXViewer CODEXViewer Public

    An ImageJ plugin to view and analyze CODEX images from the CODEXToolkit.

    Java 1

Repositories

Showing 10 of 35 repositories
  • citrus Public

    Citrus Development Code

    R 30 GPL-3.0 20 46 0 Updated Apr 14, 2024
  • REDSEA Public
    Jupyter Notebook 16 10 0 0 Updated Apr 5, 2024
  • VorteX_m Public
    Java 0 0 0 2 Updated Jul 16, 2023
  • vortex Public

    VorteX Clustering Environment - Java graphical tool for single-cell analysis, clustering and visualization. Latest release:

    Java 33 6 21 2 Updated Apr 17, 2023
  • TissueSchematics Public

    Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"

    Jupyter Notebook 9 2 0 0 Updated Mar 3, 2023
  • RAPID Public

    RAPID: a Real-time, GPU-Accelerated Parallelized Image processing software for large-scale multiplexed fluorescence microscopy Data

    MATLAB 9 GPL-3.0 0 1 0 Updated Dec 3, 2022
  • Rclusterpp Public

    Memory efficient clustering in R for large datasets

    C++ 20 11 7 2 Updated Aug 22, 2022
  • CodexUpgrader Public

    This tool is to help Codex users upgrade their processed Codex data from Nolan lab tiff or old format to the new image sequence format that is compatible to be used with MAV for analysis.

    Java 0 0 0 2 Updated May 20, 2022
  • CODEX Public

    Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation

    Java 36 MIT 13 8 3 Updated May 20, 2022
  • NeighborhoodCoordination Public

    Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive front"

    Jupyter Notebook 41 13 2 0 Updated Mar 4, 2022
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