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Achievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
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Achievements

Achievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: YOLOAchievement: QuickdrawAchievement: Arctic Code Vault Contributor
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Highlights

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Organizations

@SainsburyWellcomeCentre @afids @PRIME-RE @brainglobe @neuroinformatics-unit
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niksirbi/README.md

Hi there 👋 I'm Niko

I'm a Research Software Engineer at the Neuroinformatics Unit, based within the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

I'm developing and maintaining software tools for neuroscientists, focusing on the preprocessing and analysis of behavioural data. Previously, I worked in the field of neuroimaging and I'm still into computational neuroanatomy and brain atlases.

  • 🔭 I’m currently working on movement and NeuroBlueprint
  • 🌱 I’m learning about ML, HPC clusters, napari, quarto
  • 💬 Ask me about 🧠 brain anatomy and imaging, 😴 anesthesia, 📈 dataviz, 🧑‍🔬 open science.

Connect with me

niksirbi

Pinned

  1. neuroinformatics-unit/movement neuroinformatics-unit/movement Public

    Python tools for analysing body movements across space and time

    Python 53 6

  2. neuroinformatics-unit/NeuroBlueprint neuroinformatics-unit/NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    12

  3. pcarpet pcarpet Public

    Create a carpet plot from fMRI data and decompose it with PCA

    Python 3

  4. SainsburyWellcomeCentre/WAZP SainsburyWellcomeCentre/WAZP Public

    Wasp Animal-tracking Zoo project with Pose estimation

    Python 5 1

  5. PRIME-RE/RheMAP PRIME-RE/RheMAP Public

    Non-linear warps between common rhesus macaque brain templates

    Jupyter Notebook 21 8

  6. PRIME-RE/prime-re.github.io PRIME-RE/prime-re.github.io Public

    Open resource exchange platform for non-human primate neuroimaging

    HTML 17 7