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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

Pinned

  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 53 6

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    14

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 12 2

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 17 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 11

Repositories

Showing 10 of 44 repositories
  • NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    14 CC-BY-4.0 0 12 1 Updated May 17, 2024
  • datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 12 BSD-3-Clause 2 35 7 Updated May 17, 2024
  • HowTo Public

    NIU website on common software problems and their troubleshooting

    7 CC-BY-4.0 0 8 3 Updated May 17, 2024
  • neuroinformatics-unit.github.io Public

    Home website of the Neuroinformatics Unit

    7 BSD-3-Clause 0 8 1 Updated May 16, 2024
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    Python 6 BSD-3-Clause 0 3 0 Updated May 16, 2024
  • movement Public

    Python tools for analysing body movements across space and time

    Python 53 BSD-3-Clause 6 47 2 Updated May 15, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 11 BSD-3-Clause 0 23 3 Updated May 13, 2024
  • rsp-vision Public

    Analysis and visualization of calcium imaging data from retrosplenial cortex

    Python 6 BSD-3-Clause 0 23 1 Updated May 13, 2024
  • software-skills Public

    Software skills training at the Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit

    7 CC-BY-4.0 0 0 0 Updated May 7, 2024
  • scripts Public

    Small but useful scripts to share

    Python 7 0 0 0 Updated May 7, 2024
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