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There is nothing preventing the user from selecting the tool sentieon_dedup with a non-sentieon aligner, that combination however causes the pipeline to crash.
No user has requested that it should be possible to run such a combination, but the "bug" did pop up during the test done by a user.
Unless the combination is requested by a user, let's just have the pipeline stop with a suitable error message on such a combination of tool and aligner.
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
There is nothing preventing the user from selecting the tool
sentieon_dedup
with a non-sentieon aligner, that combination however causes the pipeline to crash.https://nfcore.slack.com/archives/CGFUX04HZ/p1713879506993449
No user has requested that it should be possible to run such a combination, but the "bug" did pop up during the test done by a user.
Unless the combination is requested by a user, let's just have the pipeline stop with a suitable error message on such a combination of tool and aligner.
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: