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Implement nf-test #61

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WackerO opened this issue Feb 6, 2023 · 2 comments · May be fixed by #168
Open

Implement nf-test #61

WackerO opened this issue Feb 6, 2023 · 2 comments · May be fixed by #168
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@pinin4fjords
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enhancement New feature or request

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@WackerO
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WackerO commented Feb 6, 2023

Description of feature

I'm going to switch the github ci to pytest-workflow so that github can monitor the consistency of pipeline output instead of just checking that PRs don't make the pipeline fail
@WackerO WackerO added enhancement New feature or request WIP This issue is already being worked on labels Feb 6, 2023
@WackerO WackerO self-assigned this Feb 6, 2023
@apeltzer
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apeltzer commented Feb 7, 2023

Rather go for nf-test please, not pytest anymore.

@WackerO WackerO changed the title Implement pytest Implement nf-test Feb 8, 2023
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WackerO commented Feb 8, 2023

I will move this back a bit until the hackathon, maybe nf-test can be discussed then (if this is the recommended nf-core/nextflow testing tool, it would be great to also have a bit more documentation, e.g. how to best test multiple profiles of a pipeline)

@WackerO WackerO removed the WIP This issue is already being worked on label Feb 8, 2023
@pinin4fjords pinin4fjords modified the milestone: 1.3.0 Oct 10, 2023
@pinin4fjords pinin4fjords self-assigned this Oct 13, 2023
@pinin4fjords pinin4fjords linked a pull request Oct 13, 2023 that will close this issue
[WIP] add pipeline-level nf-test #168
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enhancement New feature or request
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Hackathon: November 2023
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[WIP] add pipeline-level nf-test nf-core/differentialabundance
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@apeltzer @pinin4fjords @WackerO