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funannotate v1.8.5
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@nextgenusfs nextgenusfs released this 15 Mar 02:01
· 236 commits to master since this release
v1.8.5
e0c380b

Bug fix release, recommended for all users.

  • use uuid unique identifier for tmp file names (previous uses process id)
  • fix diamond command in mapping proteins to genome #529
  • add some contig name checking for inputs to predict -- some users erroneously pass GFF3 files that reference transcripts or some other assembly, warn user #528
  • add support for antiSMASH v6 #531 #539
  • check genome for IUPAC errors #532
  • re-write long reads mapping to trinity transcripts #539
  • allow for fewer busco models for training #556
  • expose some EVM parameters to predict #558
  • modify EVM partitioning -- some gene models close to partition were not being called correctly #558.
  • support newly released eggnog-mapper >= v2.0.5 #566, note that v2.x - 2.0.4 will not be supported as the output is broken in the sense that it is impossible to parse the proper EggNog reference ID. If you are using any eggnog results from this code, strongly advised to re-run with new release.
  • add _pasa to PASA database names #398. Note -- this change could potentially cause pre-existing databases run with older funannotate code to not be recognized properly after v1.8.5.
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