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funannotate v1.7.3

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@nextgenusfs nextgenusfs released this 17 Feb 18:57
· 344 commits to master since this release
  • bug fix release. This will be the last release before updating the code for py3
  • bug fix for remote #379
  • improve GFF3 parsing in funannotate annotate allow for non-funannotate identifiers (hopefully this catches most of them)
  • --aligners option was missing from help menu in train/update
  • add --debug flag to funannotate iprscan -- there is potentially still an issue here combining results from the newest release of Interproscan -- I need some intermediate results to see what the problem is
  • fix GO annotations parsing for more versions of goatools #363
  • fix for bug in the "gene start or end in a gap" function
  • make sure funannotate annotate re-runs tbl file generation if script is re-run
  • fix in PASA function logic where PASA db not found if using --gff and --fasta input.