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funannotate v0.5.2
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@nextgenusfs nextgenusfs released this 18 Dec 01:08
· 1047 commits to master since this release
0.5.2
5899e90
  • update to dN/dS function to have two options: 1) --run_dnds estimate (which runs the M0 model only), and 2) --run_dnds full (which runs M0, M1, M2, M7, M8 and calculates the LTR of M1/M2 and M7/M8).
  • update to the multiprocessing progress function - a simple progress meter is used on most multiprocessing functions to let user know how many processes have finished
  • bug fix where transcripts and proteins were getting written to same file in funannotate predict
  • minor bug fix in funannotate clean where input number of scaffolds was not printed out correctly
  • change the default location of DB as per requested by some users, now defaults to $HOME/funannotate. Note you can set this to whatever directory you want.
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