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funannotate v0.4.0
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@nextgenusfs nextgenusfs released this 05 Dec 05:27
· 1057 commits to master since this release
0.4.0
85b94a8
  • integration of BUSCO2 script and models. Can see the BUSCO2 distribution here, funannotate uses a slightly modified version to be compatible with the BUSCO->EVM workflow.
  • BUSCO2 models have changed a bit, there are now a lot more options for various taxonomic groups. Something to keep in mind though is that the model names for dikarya are not the same as pezizomycotina so if you use an --outgroup option be sure that the outgroup was generated with same BUSCO DB
  • The funannotate setup script will remove previous BUSCO DB models and download the new ones because of the extensive change in the BUSCO2 structure.
  • addition of funannotate outgroups to help you mange the outgroups available to funannotate compare
  • the scripts will download and format any of the available BUSCO2 eukaryote models, to see a list in a taxonomic tree format you can type funannotate outgroups --show_buscos
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