funannotate v0.3.1

• important bug fix for augustus, previous versions were running augustus with the stop codon inside the prediction, which results in the gene models to fail validation in evidence modeler, thus this update is recommended for all users
• added high quality augustus models to be pulled out of annotation if they are represented by evidence using the --hintsfile, these models are passed to EVM with additional weight
• fixed genemark bug where a single contig resulted in an error, thus funanntoate predict can now handle a single contig as input correctly.