try to fix docker build env with mambaforge starting point

nextgenusfs · Sep 6, 2023 · 7d9496f · 7d9496f
1 parent e9a0107
commit 7d9496f
Showing 1 changed file with 2 additions and 3 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -1,9 +1,8 @@
 # start with miniconda3 as build environment
-FROM continuumio/miniconda3 AS build
+FROM condaforge/mambaforge AS build
 
 # Update, install mamba and conda-pack:
-RUN conda update -n base -c defaults --yes conda && \
-    conda install -c conda-forge -n base --yes mamba conda-pack
+RUN mamba install -n base --yes conda-pack
 
 # Install funannotate deps from bioconda
 # here specifying specific versions to be able to set ENV below