unclear if this fixes bug #977 but attempts to make sure logger is av…

…ailable
nextgenusfs · Oct 30, 2023 · 765916b · 765916b
1 parent 24d6aaa
commit 765916b
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/funannotate/library.py b/funannotate/library.py
@@ -5359,6 +5359,7 @@ def gff2dict(file, fasta, Genes, debug=False, gap_filter=False):
                     for y in [1, 2, 3]:
                         protSeq = translate(cdsSeq, v["strand"], y - 1)
                         if not protSeq:
+                            log = logging.getLogger(__name__)
                             log.debug(
                                 "Translation of {:} using {:} phase failed".format(
                                     v["ids"][i], y - 1