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try to pin version installed via pip
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Jon Palmer committed Aug 9, 2022
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2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -8,7 +8,7 @@ RUN conda update -n base -c defaults --yes conda && \
# Install funannotate deps from bioconda
# here specifying specific versions to be able to set ENV below
RUN mamba create -c conda-forge -c bioconda -c defaults \
-n funannotate --yes "python>=3.6,<3.9" biopython xlrd \
-n funannotate --yes "python>=3.6,<3.9" biopython xlrd==1.2.0 \
"trinity==2.8.5" "evidencemodeler==1.1.1" "pasa==2.4.1" "codingquarry==2.0" \
"proteinortho==6.0.16" goatools matplotlib-base natsort numpy pigz \
pandas psutil requests scikit-learn scipy seaborn "blast=2.2.31" \
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