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Releases: mdshw5/pyfaidx

v0.5.1

26 Oct 17:21
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v0.5.0.1

11 Sep 14:49
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  • Removed BGZF warning (#123) since the test suite contains good coverage of this feature.

v0.5.0

25 Jul 18:49
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  • coordinates with start > end can be auto reverse complemented using --auto-strand argument (#120)
  • --no-coords flag in faidx script suppresses "sequence:start-end" in output sequence headers (#121)
  • Sequence.long_name is deprecated in favor of Sequence.fancy_name. Sequence.longname() is now removed from the codebase after previous DeprecationWarnings.

v0.4.9.2

15 Jun 17:35
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  • Fixed issue in key_function validation logic

v0.4.9.1

15 Jun 15:40
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  • Faster faidx -i nucleotide code

v0.4.9

14 Jun 02:01
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  • Support for resolving duplicate keys using duplicate_action argument to Fasta
  • Support for BGZF (block gzip compressed) FASTA files (#77) (Thanks @terrycojones!)
  • Support for numpy 32bit and 64bit integer comparisons (#114)
  • Better file locking and buffer flushing (#110)

v0.4.8.5

05 May 13:52
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  • support for numpy integer types (#114)
  • key_function now applies to indexing as well as sequence retrieval (#111)
  • preliminary support for BGZF compressed files (#77) (Thanks @terrycojones)

v0.4.8.4

18 Apr 17:53
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  • Fasta(mutable = True) now performs synchronous writes (#110)

v0.4.8.3

26 Mar 15:14
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  • Sequence.longname is now Sequence.long_name to match FastaRecord.long_name (thanks @michaelbarton)
  • Sequence.longname now raises a DeprecationWarning, and will be eliminated in a future release.

v0.4.8.2

02 Mar 02:23
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Added faidx -e option.