Releases: mdshw5/pyfaidx
Releases · mdshw5/pyfaidx
v0.6.3
FastaVariant
raises an exception when the requested sequence is not present in both the FASTA and VCF file (#180) (Thanks @lldelisle!)
v0.6.2
- Fixed reverse and complement cli parameters to also work with sequence transformation (#178)
v0.6.1
- Add better documentation in help text #177
v0.5.9.5
This is a small bug fix for #172, and allows proper counting of all IUPAC bases when using faidx --transform nucleotide
.
v0.5.9.2
This release fixes a bug encountered when retrieving sequence from FASTA files with "Windows" line endings ("/r/n") #141. Thanks @andrewhill157. There is no need to re-index files.
v0.5.9.1
- Refactored FAI writing to account for system locale setting (#166) @folded
v0.5.9
- more efficient iterator method for
Fasta
objects in #163 (thanks @C-nit)
v0.5.7
Fasta
instances now have dictionary methods: Fasta.keys
returns sequence names, Fasta.values
returns FastaRecord
instances, and Fasta.items
returns a tuple of (key, value) pairs. #156 (thanks @Maarten-vd-Sande)