Merge pull request #185 from mdshw5/develop

Remove deprecated argument to random.shuffle
mdshw5 · Jan 31, 2022 · b6ca41b · b6ca41b
2 parents ede9a1b + 5a81446
commit b6ca41b
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/pyfaidx/__init__.py b/pyfaidx/__init__.py
@@ -352,8 +352,8 @@ def __init__(self,
             try:
                 from Bio import bgzf
                 from Bio import __version__ as bgzf_version
-                from distutils.version import LooseVersion
-                if LooseVersion(bgzf_version) < LooseVersion('1.73'):
+                from packaging.version import Version
+                if Version(bgzf_version) < Version('1.73'):
                     raise ImportError
             except ImportError:
                 raise ImportError(

diff --git a/tests/test_Fasta_synchronization.py b/tests/test_Fasta_synchronization.py
@@ -22,7 +22,7 @@ def __init__(self, rand, result_map, result_lock, name, seq):
 
         seq_len = len(seq)
         sub_seq_slices = list(slice(i, min(i + 20, seq_len)) for i in range(0, seq_len, 20))
-        random.shuffle(sub_seq_slices, rand.random)
+        random.shuffle(sub_seq_slices)
 
         self.result_map = result_map
         self.result_lock = result_lock
@@ -52,7 +52,7 @@ def __init__(self, rand, name, seq):
 
         seq_len = len(seq)
         sub_seq_slices = list(slice(i, min(i + 20, seq_len)) for i in range(0, seq_len, 20))
-        random.shuffle(sub_seq_slices, rand.random)
+        random.shuffle(sub_seq_slices)
 
         self.name = name
         self.seq = seq