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25 Open 110 Closed
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Issues list

source activate fail
#147 opened Jul 18, 2019 by yinshiyi
3
genome hg38 install
#145 opened Mar 14, 2019 by danxunLi
3
Inconsistant behavior of pipeline-runs, with same input parameters
#144 opened Feb 13, 2019 by ravipatel4
3
mm10 vs Grcm38(Gencode)
#143 opened Jan 4, 2019 by pdellorusso
1
How to cite this ppeline
#140 opened Sep 18, 2018 by sjn7
1
differences between "new" and "old" pipeline
#139 opened Sep 6, 2018 by computbiolgeek
4
Installing dependencies (bash install_dependencies.sh
#138 opened Sep 5, 2018 by grrompala
1
Error in postalign_xcor.bds', line 102
#135 opened Aug 27, 2018 by beckedorff
5
Fatal error: atac.bds, line 1200, pos 2. Task/s failed....during peakcalling
#134 opened Jul 16, 2018 by grrompala
1
Can I install this ATAC-pipeline in Mac?
#132 opened Jul 11, 2018 by llz-hiv
16
Steps between pipeline and diffE
#129 opened Jun 28, 2018 by raboul101
1
Compile error for atac.bds
#127 opened Jun 26, 2018 by DuYushen
1
Data set
#126 opened Jun 26, 2018 by rehamFatima
24
Comparing Treatments with Multiple Paired End Replicates
#125 opened Jun 25, 2018 by raboul101
11
Java memory issue
#124 opened Jun 25, 2018 by ahorn720
1
Can this pipeline be used for analyzing paired-end 75bp reads?
#123 opened Jun 7, 2018 by liangzhuli
1
Removing Mitochondrial hits is not consistent between replicate and pseudo replicates
#116 opened May 17, 2018 by amirshams84
1
Fatal error: /atac_dnase_pipelines/modules/conf.bds, line 39. Java heap space
#115 opened May 16, 2018 by nteran
4
FRiP calculation absent
#113 opened May 13, 2018 by am33567
1
Fatal Error in call peaks when starting with tag aligns
#109 opened May 3, 2018 by easwaranramamurthy
1
java.lang.IndexOutOfBoundsException
#108 opened May 3, 2018 by am33567
1
UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 30
#105 opened Apr 23, 2018 by sckinta
5
MACS2 Set pValue to -1 and terrifies IDR
#75 opened Oct 23, 2017 by amirshams84
3
Add option for separating out technical replicates
#17 opened May 24, 2016 by nboley
4
Speedup TODOS
#15 opened May 18, 2016 by nboley
ProTip! What’s not been updated in a month: updated:<2024-04-14.