Fixing os.path.join for python 3.5

juliema · Apr 19, 2019 · 00e67ed · 00e67ed
1 parent 371aa9b
commit 00e67ed
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -32,3 +32,4 @@ junk*
 
 build/
 dist/
+exon_stitching/
diff --git a/lib/core_atram.py b/lib/core_atram.py
@@ -14,7 +14,6 @@
 
 def assemble(args):
     """Loop thru every blast/query pair and run an assembly for each one."""
-
     with util.make_temp_dir(
             where=args['temp_dir'],
             prefix='atram_',

diff --git a/lib/util.py b/lib/util.py
@@ -40,7 +40,7 @@ def temp_dir_exists(temp_dir, debug_dir=None):
 def update_temp_dir(temp_dir, args):
     """Handle the new temporary directory name."""
     args['temp_root'] = args['temp_dir']
-    args['temp_dir'] = temp_dir
+    args['temp_dir'] = str(temp_dir)
     os.environ['SQLITE_TMPDIR'] = temp_dir