You can run this app online to explore own data and the data from the paper at https://kons.shinyapps.io/trees/.

Download and run locally:

git clone https://github.com/henssenlab/TreeShapedRearrangementsShinyApp.git
cd TreeShapedRearrangementsShinyApp
Rscript -e 'shiny::runApp("app.R", launch.browser=TRUE)'

Requirements:

• R 3.5.1
• shiny 1.2.0
• ggplot2 3.1.0
• dplyr 0.8.0.1
• tidyr 0.8.3
• circlize 0.4.5
• DT 0.5

Contact: henssenlab@gmail.com